
@article{winter_electronic_2007,
	title = {An “{Electronic} {Fluorescent} {Pictograph}” browser for exploring and analyzing large-scale biological data sets},
	volume = {2},
	doi = {10.1371/journal.pone.0000718},
	number = {8},
	journal = {PloS one},
	author = {Winter, Debbie and Vinegar, Ben and Nahal, Hardeep and Ammar, Ron and Wilson, Greg V. and Provart, Nicholas J.},
	year = {2007},
	note = {ISBN: 1932-6203
Publisher: Public Library of Science San Francisco, USA},
	pages = {e718},
}

@article{kahle_ggmap_2013,
	title = {ggmap: spatial visualization with ggplot2.},
	volume = {5},
	doi = {10.32614/rj-2013-014},
	number = {1},
	journal = {R J.},
	author = {Kahle, David J. and Wickham, Hadley},
	year = {2013},
	pages = {144},
}

@article{kajala_innovation_2021,
	title = {Innovation, conservation, and repurposing of gene function in root cell type development},
	volume = {184},
	doi = {10.1016/j.cell.2021.04.024 Free article},
	number = {12},
	journal = {Cell},
	author = {Kajala, Kaisa and Gouran, Mona and Shaar-Moshe, Lidor and Mason, G. Alex and Rodriguez-Medina, Joel and Kawa, Dorota and Pauluzzi, Germain and Reynoso, Mauricio and Canto-Pastor, Alex and Manzano, Concepcion},
	year = {2021},
	note = {ISBN: 0092-8674
Publisher: Elsevier},
	pages = {3333--3348. e19},
}

@article{belmonte_comprehensive_2013,
	title = {Comprehensive developmental profiles of gene activity in regions and subregions of the {Arabidopsis} seed},
	volume = {110},
	doi = {10.1073/pnas.1222061110},
	number = {5},
	journal = {Proceedings of the National Academy of Sciences},
	author = {Belmonte, Mark F. and Kirkbride, Ryan C. and Stone, Sandra L. and Pelletier, Julie M. and Bui, Anhthu Q. and Yeung, Edward C. and Hashimoto, Meryl and Fei, Jiong and Harada, Corey M. and Munoz, Matthew D.},
	year = {2013},
	note = {ISBN: 0027-8424
Publisher: National Acad Sciences},
	pages = {E435--E444},
}

@article{sotta_preparing_2017,
	title = {Preparing thin cross sections of {Arabidopsis} roots without embedding},
	volume = {63},
	doi = {10.2144/000114621},
	number = {6},
	journal = {BioTechniques},
	author = {Sotta, Naoyuki and Fujiwara, Toru},
	year = {2017},
	note = {ISBN: 0736-6205
Publisher: Future Science},
	pages = {281--283},
}

@article{rahni_week-long_2019,
	title = {Week-long imaging of cell divisions in the {Arabidopsis} root meristem},
	volume = {15},
	doi = {10.1186/s13007-019-0417-9},
	journal = {Plant Methods},
	author = {Rahni, Ramin and Birnbaum, Kenneth D.},
	year = {2019},
	note = {Publisher: Springer},
	pages = {1--14},
}

@article{nguyen_high-resolution_2015,
	title = {High-resolution confocal imaging of wall ingrowth deposition in plant transfer cells: {Semi}-quantitative analysis of phloem parenchyma transfer cell development in leaf minor veins of {Arabidopsis}},
	volume = {15},
	doi = {10.1186/s12870-015-0483-8},
	number = {1},
	journal = {BMC Plant Biology},
	author = {Nguyen, Suong TT and McCurdy, David W.},
	year = {2015},
	note = {ISBN: 1471-2229
Publisher: BioMed Central},
	pages = {1--14},
}

@article{guo_spatiotemporal_2021,
	title = {A spatiotemporal molecular switch governs plant asymmetric cell division},
	volume = {7},
	doi = {10.1038/s41477-021-00906-0},
	number = {5},
	journal = {Nature plants},
	author = {Guo, Xiaoyu and Park, Chan Ho and Wang, Zhi-Yong and Nickels, Bryce E. and Dong, Juan},
	year = {2021},
	note = {ISBN: 2055-0278
Publisher: Nature Publishing Group UK London},
	pages = {667--680},
}

@article{vanhaeren_journey_2015,
	title = {A journey through a leaf: phenomics analysis of leaf growth in {Arabidopsis} thaliana},
	volume = {13},
	doi = {10.1199/tab.0181},
	journal = {The Arabidopsis Book/American Society of Plant Biologists},
	author = {Vanhaeren, Hannes and Gonzalez, Nathalie and Inzé, Dirk},
	year = {2015},
	note = {Publisher: American Society of Plant Biologists},
}

@article{wendrich_rabidopsis_2013,
	title = {The {A} rabidopsis embryo as a miniature morphogenesis model},
	volume = {199},
	doi = {10.1111/nph.12267},
	number = {1},
	journal = {New Phytologist},
	author = {Wendrich, Jos R. and Weijers, Dolf},
	year = {2013},
	note = {ISBN: 0028-646X
Publisher: Wiley Online Library},
	pages = {14--25},
}

@article{fuchs_aiming_2020,
	title = {Aiming for the top: non-cell autonomous control of shoot stem cells in {Arabidopsis}},
	volume = {133},
	doi = {10.1007/s10265-020-01174-3},
	number = {3},
	journal = {Journal of plant research},
	author = {Fuchs, Michael and Lohmann, Jan U.},
	year = {2020},
	note = {ISBN: 0918-9440
Publisher: Springer},
	pages = {297--309},
}

@article{shi_tissue-specific_2021,
	title = {Tissue-specific transcriptome profiling of the {Arabidopsis} inflorescence stem reveals local cellular signatures},
	volume = {33},
	doi = {10.1093/plcell/koaa019},
	number = {2},
	journal = {The Plant Cell},
	author = {Shi, Dongbo and Jouannet, Virginie and Agustí, Javier and Kaul, Verena and Levitsky, Victor and Sanchez, Pablo and Mironova, Victoria V. and Greb, Thomas},
	year = {2021},
	note = {ISBN: 1532-298X
Publisher: Oxford University Press},
	pages = {200--223},
}

@article{shahan_single-cell_2022,
	title = {A single-cell {Arabidopsis} root atlas reveals developmental trajectories in wild-type and cell identity mutants},
	volume = {57},
	doi = {10.1016/j.devcel.2022.01.008},
	number = {4},
	journal = {Developmental cell},
	author = {Shahan, Rachel and Hsu, Che-Wei and Nolan, Trevor M. and Cole, Benjamin J. and Taylor, Isaiah W. and Greenstreet, Laura and Zhang, Stephen and Afanassiev, Anton and Vlot, Anna Hendrika Cornelia and Schiebinger, Geoffrey},
	year = {2022},
	note = {ISBN: 1534-5807
Publisher: Elsevier},
	pages = {543--560. e9},
}

@book{taiz_plant_2015,
	title = {Plant physiology and development.},
	isbn = {1-60535-353-1},
	publisher = {Sinauer Associates Incorporated},
	author = {Taiz, Lincoln and Zeiger, Eduardo and Møller, Ian Max and Murphy, Angus},
	year = {2015},
	note = {Issue: Ed. 6},
}

@article{torres-martinez_lateral_2019,
	title = {Lateral root primordium morphogenesis in angiosperms},
	volume = {10},
	doi = {10.3389/fpls.2019.00206},
	journal = {Frontiers in plant science},
	author = {Torres-Martinez, Hector H. and Rodriguez-Alonso, Gustavo and Shishkova, Svetlana and Dubrovsky, Joseph G.},
	year = {2019},
	note = {ISBN: 1664-462X
Publisher: Frontiers Media SA},
	pages = {206},
}

@article{cuperus_single-cell_2022,
	title = {Single-cell genomics in plants: current state, future directions, and hurdles to overcome},
	volume = {188},
	doi = {10.1093/plphys/kiab478},
	number = {2},
	journal = {Plant Physiology},
	author = {Cuperus, Josh T.},
	year = {2022},
	note = {ISBN: 0032-0889
Publisher: Oxford University Press},
	pages = {749--755},
}

@article{libault_plant_2017,
	title = {Plant systems biology at the single-cell level},
	volume = {22},
	doi = {10.1016/j.tplants.2017.08.006},
	number = {11},
	journal = {Trends in Plant Science},
	author = {Libault, Marc and Pingault, Lise and Zogli, Prince and Schiefelbein, John},
	year = {2017},
	note = {ISBN: 1360-1385
Publisher: Elsevier},
	pages = {949--960},
}

@article{wickham_ggplot2_2011,
	title = {ggplot2},
	volume = {3},
	number = {2},
	journal = {Wiley interdisciplinary reviews: computational statistics},
	author = {Wickham, Hadley},
	year = {2011},
	note = {ISBN: 1939-5108
Publisher: Wiley Online Library},
	pages = {180--185},
}

@article{tsukaya_leaf_2013,
	title = {Leaf development},
	volume = {11},
	doi = {10.1199/tab.0163},
	journal = {The Arabidopsis Book/American Society of Plant Biologists},
	author = {Tsukaya, Hirokazu},
	year = {2013},
	note = {Publisher: American Society of Plant Biologists},
}

@article{de_chaumont_icy_2012,
	title = {Icy: an open bioimage informatics platform for extended reproducible research},
	volume = {9},
	doi = {10.1038/nmeth.2075},
	number = {7},
	journal = {Nature methods},
	author = {De Chaumont, Fabrice and Dallongeville, Stéphane and Chenouard, Nicolas and Hervé, Nicolas and Pop, Sorin and Provoost, Thomas and Meas-Yedid, Vannary and Pankajakshan, Praveen and Lecomte, Timothée and Le Montagner, Yoann},
	year = {2012},
	note = {ISBN: 1548-7091
Publisher: Nature Publishing Group US New York},
	pages = {690--696},
}

@article{ron_identification_2013,
	title = {Identification of novel loci regulating interspecific variation in root morphology and cellular development in tomato},
	volume = {162},
	doi = {10.1104/pp.113.217802},
	number = {2},
	journal = {Plant Physiology},
	author = {Ron, Mily and Dorrity, Michael W. and de Lucas, Miguel and Toal, Ted and Hernandez, R. Ivan and Little, Stefan A. and Maloof, Julin N. and Kliebenstein, Daniel J. and Brady, Siobhan M.},
	year = {2013},
	note = {ISBN: 1532-2548
Publisher: American Society of Plant Biologists},
	pages = {755--768},
}
